> For the complete documentation index, see [llms.txt](https://book.ncrnalab.org/teaching/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://book.ncrnalab.org/teaching/part-ii.-basic-analyses/4.clinical-analyses.md).

# 4.Clinical Analyses

## 1) Table of Contents

* [Survival Analysis](/teaching/part-ii.-basic-analyses/4.clinical-analyses/survival_analysis.md)

## 2) Files Needed

### Method 1: Use Docker

docker images的下载链接如[附表](/teaching/appendix/appendix-iv.-teaching.md#teaching-docker)所示，加载完我们提供的image后，文件都已经准备好了，可以这样查看：

```bash
docker load -i ~/Desktop/bioinfo_roc_survival.tar.gz

docker run --name=bioinfo_roc_survival  -dt -h bioinfo_docker --restart unless-stopped -v ~/Downloads/data:/data gangxu/bioinfo_roc_survival:1.0

docker exec -it bioinfo_roc_survival bash

# Survival Analysis

cd /home/test/clinical_analysis
```

### Method 2: Directly Download

* 如果不使用docker，也可以直接从 [**Files needed** ](https://courses.ncrnalab.org/files)中的**Files/** 路径下的相应文件夹中下载所需要的文件。


---

# Agent Instructions
This documentation is published with GitBook. GitBook is the documentation platform designed so that both humans and AI agents can read, navigate, and reason over technical content effectively. Learn more at gitbook.com.

## Querying This Documentation
If you need additional information that is not directly available in this page, you can query the documentation dynamically by asking a question.

Perform an HTTP GET request on the current page URL with the `ask` query parameter, and the optional `goal` query parameter:

```
GET https://book.ncrnalab.org/teaching/part-ii.-basic-analyses/4.clinical-analyses.md?ask=<question>&goal=<endgoal>
```

`ask` is the immediate question: it should be specific, self-contained, and written in natural language.
`goal` is optional and describes the broader end goal you are ultimately trying to accomplish on behalf of the user. GitBook uses it to tailor the answer towards what is most useful for that goal.

The response will contain a direct answer to the question and relevant excerpts and sources from the documentation.

Use this mechanism when the answer is not explicitly present in the current page, you need clarification or additional context, or you want to retrieve related documentation sections.
