Bioinformatics Tutorial
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Bioinformatics Tutorial
Getting Started
Part I. Basic Skills
1.Setup
2.Linux
3.R
4.Python
PART II. BASIC ANALYSES
1.Blast
2.Conservation Analysis
3.Function Analysis
4.Clinical Analyses
Part III. NGS DATA ANALYSES
1.Mapping
2.RNA-seq
3.ChIP-seq
4.Motif
5.RNA Network
6.RNA Regulation - I
7.RNA Regulation - II
8.cfDNA
8.1.Basic cfDNA-seq Analyses
Part IV. MACHINE LEARNING
1.Machine Learning Basics
2.Machine Learning with R
3.Machine Learning with Python
Part V. Quiz
1.Precision Medicine - exSEEK
2.RNA Regulation - RiboShape
3.Single Cell Data Analysis
Appendix
Appendix I. Keep Learning
Appendix II. Databases & Servers
Appendix III. How to Backup
Appendix IV. Teaching Materials
Appendix V. Software and Tools
Appendix VI. Genome Annotations
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8.1.Basic cfDNA-seq Analyses
1) Background
2) Workflow
3) Running Steps
2a) Input files
2b) Example output
Part III. NGS DATA ANALYSES - Previous
8.cfDNA
Next - Part IV. MACHINE LEARNING
1.Machine Learning Basics
Last modified
5mo ago
