Bioinformatics Tutorial

Getting Started
Part I. Programming Skills
PART II. BASIC ANALYSES
Part III. NGS DATA ANALYSES
Part IV. MACHINE LEARNING
Part V. Assignments
Appendix

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0) Introduction of WGCNA
1) Pipeline
2) Data structure
2a) Getting software & data
2b) Input data
2c) Output data
3) Running steps
3a) Install packages
3b) Library the WGCNA package
3c) Import data
3d) Pick the soft thresholding power
3e) One-step network construction and module detection
3f) Module visualization
3g) Quantify module similarity by eigengene correlation
3h) Find the relationships between modules and traits
3i) Select specific module
4) Homework
5) References

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Part III. NGS DATA ANALYSES

5.RNA Network

5.1.Co-expression Network

Previous5.RNA Network Next5.2.miRNA Targets

Last updated 3 years ago

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