8.cfDNA
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Previous cfDNA studies have demonstrated that various features could be derived from cfDNA-seq and cfDNA methylation (cfDNAmet) sequencing data for diagnostic measurement. These features include:
cfDNAmet-seq
methylation level at promoter region
methylation level at gene body level
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cfDNA-seq
Mutation (requires deep sequencing depth)
CNV
Nucleosome occupancy footprint (scores: ration/CPM/WPS) ( by Y Li)
Fragment size profile
End motif pattern
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Instructions: and by PF Bao
Literatures: